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Spectral Trend Database

a historical database of spectral indices

Authors
Affiliations
The Eric and Wendy Schmidt Center for Data Science & Environment
University of California, Berkeley
The Eric and Wendy Schmidt Center for Data Science & Environment
University of California, Berkeley

Abstract

DSE’s Spectral Trends Database uses data from NASA’s Landsat satellites to track over 14,000 points in corn and soy fields in the midwestern United States. The database contains daily values for 36 different vegetation indices from the year 2000 to present, along with a number of derivative metrics that are useful for detecting crop planting and harvesting. The data will be useful for myriad agriculture applications, including the study and monitoring of yield, yield-stability, soil health, cover-cropping, and other sustainable agricultural practices.

Schmidt DSE is now beginning to explore this data with a particular focus on yield-stability and cover-cropping (our collaborators at the US Department of Agriculture are particularly interested in the latter). Because this database will be public, our hope is that the data will help empower and accelerate research and action in the agricultural field more broadly. Moreover, we are releasing an open-source codebase so that researchers can quickly generate new databases for their own locations and metrics of interest.

Keywords:regenerative agricultureremote sensing

Code Repository: https://github.com/SchmidtDSE/spectral_trend_database
API Documentation: https://schmidtdse.github.io/spectral_trend_database/docs


Introduction

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Figure 1:Example of spectral-index curves versus yield for a randomly selected point in our database (2000-2012). Select the index of interest using the “SPECTRAL INDEX” drop-down.

Spectral indices, mathematical combinations of pixel values, play an important role in remote sensing. The most well known example would be the Normalized Difference Vegetation Index (NDVI):

NDVI=NIRREDNIR+RED\text{NDVI} = \frac{\text{NIR} - \text{RED}}{\text{NIR} + \text{RED}}

Why is this of interest? Vegetation appears green because the vegetation reflects green light and absorbs red light. One then might assume the difference between green and red is a good measure of vegetation. An index constructed from this difference known as the Green Normalized Difference Vegetation Index is useful for studying dense cannopies at later stages of developement. As described here GNDVI “is an indicator of the photosynthetic activity of the vegetation cover; it is most often used in assessing the moisture content and nitrogen concentration in plant leaves according to multispectral data which do not have an extreme red channel.”

Thanks to multi-spectral satellites we are not confined to our lived experince of visible wavelengths. It turns out that the cell structures within plants also reflect Near Infrared (NIR). The difference between NIR and RED is a good indicator of the “is a measure of the amount and vigor of vegetation on the land surface” (usda). The denominator in (1) is normilization term so that NDVI[1:1]\text{NDVI} \subset [-1:1].

In addition to NDVI and GNDVI there are myriad other spectral indices of interest, each with its own particular use case from: measuring water content within vegetation, to detecting water bodies or human infrastrutue, and quantifying soil moisture and soil health.

The direct goal of the Spectral Trend Database (STDB) is to compute and track a large number (36) spectral-indices over corn and soy fields from 2000 to present. Figure 1 shows one such example. Use the drop-down “SPECTRAL INDEX” to visualize different indices. The database currently is based on Landsat satellites, however we are in the process of generating the same data (2018 to present) using Sentinel-2. This data should prove useful to a large number of applications in the study of agricultural remote sensing, including the study of yeild, yeild-stablity, cover-croping and other regenerative agricultural practices and soil health.

This particular datasbase has been constructed for studying corn and soy. The general techniques, however, are applicable to a number of other scientific studies. Our open-source code base is constructed to allow the user to easily re-run these calcuations for their particular sample points, data sources, time periods, and spectral indices of interest, broadening the potential applications far beyond corn and soy, or even agricultural studies.